PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021577
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 185aa    MW: 20408.7 Da    PI: 7.0008
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021577genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.94.9e-4513111199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasn++kll+++ +++reda++sl+yeAear+rdPvyG+vg i+ lq q+e+l++el++++
  DCAR_021577  13 PCAACKFLRRKCVPDCIFAPYFPPEEPHKFANVHKIFGASNITKLLNDILPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQMQVERLQEELDAAN 110
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  DCAR_021577 111 A 111
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089128.04112113IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-4413110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MASSSNTATY NTPCAACKFL RRKCVPDCIF APYFPPEEPH KFANVHKIFG ASNITKLLND  60
ILPHQREDAV NSLAYEAEAR VRDPVYGCVG AISFLQMQVE RLQEELDAAN ADLIQYASSC  120
NHRYPHQNMS SALPIQSTTT TQYTSQQAPR QIRPNNNAYY PTPSTFSFPW NDNNASGRGG  180
AAGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476856.13e-78PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476857.13e-78PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476858.13e-78PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_015385245.13e-78PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML42e-72LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A067G1Z55e-78A0A067G1Z5_CITSI; Uncharacterized protein
STRINGVIT_17s0000g09010.t014e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.49e-73LBD family protein